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126 Commits

Author SHA1 Message Date
dkoes
2bf1fee6f4 Redo examples with https 2020-10-26 22:38:20 -04:00
dkoes
f6a838191b https 2020-10-26 22:37:13 -04:00
dkoes
7158495b02 Add more options to py3Dmol view constructor 
Can provide model data and styles directly.  Fewer lines of code to get
a view.
 2020-10-26 22:32:43 -04:00
dkoes
756894f911 Performance improvements to cached selections 
Also distance calculations and improved test case.
 2020-10-03 21:03:47 -04:00
dkoes
a5216db740 Change URLS in docs 2020-08-29 13:32:16 -04:00
dkoes
3a6acb33e0 version bump 2020-08-19 21:15:56 -04:00
dkoes
5f64b7ca95 Change default domain 
Because I control this one and can actually fix problems!
 2020-08-19 21:14:34 -04:00
dkoes
1484f011f5 Volumetric improvements 
Python addVolumetricData interface updated to support volumetric
rendering.  Set bounding sphere of a volumetric render shape. Update
volumetric.ipynb
 2020-06-24 12:55:33 -04:00
dkoes
28319e2260 Don't omit bonds with bondOrder > 3 
Apparently some sdfs use a bondOrder of 4 to indicate aromatic bonds.
At some point need to implement aromatic stick visualization.
 2020-05-01 16:56:52 -04:00
David Koes
bf7bbc80b1 Fix bug with deselected atoms with sessions. 
Atom counts were only being updated on atom selections, not
deselections.
 2020-02-08 16:50:13 -05:00
David Koes
8ed260814a python3 fix to example notebook 2020-01-02 15:19:49 -05:00
David Koes
e192e7a298 ignore pyc 2019-07-22 09:37:34 -04:00
Daniel Smith
d1a360f85a py3Dmol: Makes IPython an optional depend 2019-07-16 10:09:51 -04:00
David Koes
cd218f2d1e Fix package.json to use gulp 2019-07-09 20:36:22 -04:00
David Koes
ad120a8d46 Merge branch 'master' of github.com:3dmol/3Dmol.js 2019-07-09 20:31:46 -04:00
David Koes
4fa1ab8fba Remove jupyter dependency 
Technically not needed and Daniel Smith doesn't want it.
 2019-07-09 20:31:16 -04:00
David Koes
b87f2e25f7 Switch to gulp 
Losts of code cleanup.  Some issues with rendering remain.
 2019-07-07 10:30:13 -04:00
Michael Silveira
4b29aae59e fix promise callback breaking py3dmol update method 2019-04-23 16:21:11 -07:00
David Koes
1f7f7898f9 add ability to specify zoomto selection in embedded viewer 2019-03-04 12:39:08 -05:00
David Koes
ced8b4d775 fix bug with exportVRML (clear out cached molobjs) 2019-01-05 16:25:11 -05:00
David Koes
7b616f3c64 enable getModel in py3Dmol 2018-08-25 16:22:29 -04:00
David Koes
e1da42b96e fix hoverables for cartoon 2018-08-14 20:35:02 -04:00
David Koes
c706390eaf move cap style enum to 3Dmol namespace, actually use and document it 2018-06-22 12:44:23 -04:00
David Koes
eadee7c5a2 fix serious performance regression with cylinder cache, prody/py3Dmol 
example
 2018-06-06 15:47:20 -04:00
David Koes
38fe8e7d1b refactor code to remove redundancy and bugs 2018-06-06 13:16:59 -04:00
David Koes
53cbca3f44 update py3dmol example 2018-05-02 11:10:40 -04:00
David Koes
520fb8ea91 better mmtf support. can base base64 string, parses unitcell info, 
addUnitCell will use last model if none spcified
 2018-05-02 11:02:31 -04:00
David Koes
2157551dff lic 2018-04-24 21:18:37 -04:00
David Koes
c06b18bc90 update license info 2018-04-24 21:17:36 -04:00
David Koes
2fae187b30 use png api 2018-04-18 12:58:34 -04:00
David Koes
f3e361abc3 finalize shape objects when crated in viewer for memory efficiency 2018-04-16 21:25:31 -04:00
David Koes
e268bfc9f7 default to a message if 3dmol doesn't load 2018-03-26 15:45:42 -07:00
David Koes
9f1cd059bd update readme 2018-03-25 12:35:43 -04:00
David Koes
46cb806535 initial support for jupyterlab 2018-03-25 12:17:22 -04:00
David Koes
3c4c81aef7 improved cartoon quality 2017-10-02 17:07:51 -04:00
David Koes
9050b97144 update nb 2017-09-19 22:00:01 -04:00
David Koes
f681ea62b2 createGrid py3Dmol example, rm debug output 2017-09-19 21:54:48 -04:00
David Koes
854f0b524e checkpoing py3dmol support for split viewer 2017-09-19 17:25:53 -04:00
David Koes
ddb36509fe notrack 2017-08-30 16:39:41 -04:00
David Koes
e8b25dcd52 py3Dmol on the front page 2017-05-24 13:34:17 -04:00
David Koes
0be6abab73 change update to auto-instantiate 2017-05-23 20:35:02 -04:00
David Koes
540e2feb44 bump version 2017-05-16 16:53:00 -04:00
David Koes
4174e5edb5 fix bug with canary functions 2017-05-16 16:52:04 -04:00
David Koes
ce18264b6b switch to https for better compat 2017-04-05 15:25:15 -07:00
David Koes
8ee35f3840 fix bug with translate 2017-03-23 19:58:58 -04:00
David Koes
56c71a4fd2 add insert feature to allow putting viewers in arbitrary locations 2017-03-22 10:27:05 -04:00
David Koes
18efff8382 fix bugs (missing brace!) 2017-02-22 10:58:20 -05:00
David Koes
bc2afd053f fix bug with update an noninteracte use 2017-02-12 20:03:32 -06:00
David Koes
cd1e6443a5 apparently javascript urls are case-sensitive.. 2017-02-12 19:52:06 -06:00
David Koes
1103a421a4 Merge branch 'master' of github.com:dkoes/3Dmol.js 2017-02-12 12:45:25 -06:00