David Koes
c26e390544
version bump
2026-05-22 11:33:04 -04:00
David Koes
b65f8e62d3
version bump
2026-01-21 17:55:44 -05:00
David Koes
5f28e11ebf
version bump
2025-09-27 13:27:48 -04:00
David Koes
77c5fbdc32
version bump
2025-07-30 12:18:42 -04:00
David Koes
f393cdeb4f
version bump
2025-06-26 11:23:11 -04:00
David Koes
a3da5cd3fb
switch to jsdelivr since cdnjs stopped updating months ago apparently
2025-06-03 15:25:17 -04:00
David Koes
1789c232ed
version bump
2025-06-02 19:07:30 -04:00
David Koes
4e10aca789
support options in py3dmol for view with data argument
2025-01-23 21:49:46 -05:00
David Koes
6c1f0d44bf
version bump
2024-11-07 22:29:45 -05:00
David Koes
2ef98fd973
version bump
2024-11-06 15:21:43 -05:00
David Koes
3de1fccd38
version bump
2024-09-03 18:49:49 -04:00
David Koes
0c9a67115b
Documentatoin tweak
2024-07-31 16:52:40 -04:00
David Koes
c77554e1cd
py3dmol update
2024-07-18 07:45:43 -04:00
David Koes
a1125e50f6
bump pymol3d
2024-07-06 22:27:54 -04:00
David Koes
ecd37d4dfb
update versions
2024-06-21 20:49:33 +01:00
David Koes
f4a00f8414
talk
2024-03-13 23:44:31 -07:00
David Koes
dbf2efd524
Various improvements
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py3dmol.view takes format argument
can pass selection for volumetricrender/isosurfaces
gradient documentation
onesided surface option
custom linear builtin
2024-03-13 21:20:25 -07:00
David Koes
8549c59c62
bump py3dmol
2024-03-12 08:28:10 -04:00
David Koes
afce01857b
rm ext inst
2024-02-06 11:31:36 -05:00
David Koes
e71629ba97
Fix for Issue #743
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The cartoon code was assuming DNA backbone atoms would always have a
certain order. Now can deal with a partial residue at start.
2024-01-13 14:47:27 -05:00
David Koes
bcf96d8cbf
version bump
2023-10-23 08:09:02 -04:00
David Koes
4d264473ec
Fix #721
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Object intersection testing was completly broken for viewer grids.
It is less so now.
2023-09-20 12:15:42 -04:00
Adithya Krishna
43bf4c0aa3
Revert Changes to Py File
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Signed-off-by: Adithya Krishna <adikrish@redhat.com >
2023-06-13 07:27:09 +00:00
Adithya Krishna
50bdb229dc
Updated http links to https
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Signed-off-by: Adithya Krishna <adikrish@redhat.com >
2023-06-13 07:27:09 +00:00
David Koes
381da4b862
Big fixes.
...
Be more tolerant to losing WebGL context in the middle of rendering
(happens when loading a page with many contexts). Some more types.
2023-06-08 19:57:47 -04:00
David Koes
50a91e55a4
Version bump
2023-05-13 18:39:36 -04:00
David Koes
0153c320fd
Issue #678
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write_html in py3Dmol for turning viewer into webpage
2023-05-13 17:28:23 -04:00
David Koes
6cfae963f3
Test fix and debug output removal
2023-02-14 16:23:26 -05:00
David Koes
57bcb83e99
py3dmol improvements
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Don't use the CDN minified URL (it is broken for surfaces).
Inspired by Issue #645 add print_to_console function prefix.
2023-02-10 14:40:00 -05:00
David Koes
2dd2b37ca9
Update reference images because PDB entry was changed.
2023-02-08 09:54:26 -05:00
David Koes
f3caa78059
update py3dmol js url
2023-02-06 21:22:03 -05:00
David Koes
5c0529febf
assignBonds across replicated unit cells
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Issue #642
2023-02-06 11:24:18 -05:00
David Koes
a0528e143d
Resore jquery for ui
2023-01-12 08:54:19 -05:00
David Koes
0c4625fade
Fix for apng
2023-01-04 19:51:32 -05:00
David Koes
4705fc0747
Fix for py3Dmol not working in Jupyter.
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Need to workaround requirejs amd loading.
2023-01-04 19:47:44 -05:00
David Koes
1f67c9ee4f
Fix py3Dmol
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I thought I had checked it.. I thought wrong. No longer uses jquery.
2023-01-04 14:21:51 -05:00
dkoes
024c3cb209
Repository reorg
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Ryan Guild preferred excessively elaborate file hierarchies. Since he
has abandoned the project we're going to go with what makes sense to me
(and is arguably more correct - 3dmol is the only true package, so why
factor it into a packages directory).
Clean up some other issues with typescript and imports.
2022-12-24 22:49:53 -05:00
Ryan D. Guild
79d8a9bc89
rewrote docs to workspaces based config
2022-07-29 11:05:43 -04:00
dkoes
9bd856d543
More flexible width/height; avoid getdoc
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colab seems to call getdoc on the object, should ignore it. Hopefully
this doesn't break things.
2022-01-28 11:25:13 -05:00
dkoes
59260ea086
Update saveanim
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to not set local 3dmol.js path.
2022-01-22 11:51:35 -05:00
dkoes
7a4fa760eb
Changes to build system.
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Disable amd when importing external sources so they populate the
namespace as expected. Otherwise we lose access to them in request
based projects (like jupyter).
I'm pulling in UPNG now to support creation of animated pngs in py3Dmol.
2022-01-22 11:37:23 -05:00
dkoes
6618f55121
Refine download syntax. Rearrange py3dmol args
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While try to infer type of query. Make query the first argument of
py3Dmol.view so you can do py3Dmol.view("1ycr")
Package updates for apng
2022-01-21 18:01:57 -05:00
dkoes
17d06bdc5a
fix surface issue
2022-01-21 13:03:29 -05:00
David Koes
b7bc1d7a07
Implement support for array coordinates
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Can provide an array (TxNx3) of coordinates.
py3Dmol will convert arrays/tensors to javascript lists.
2021-09-08 10:10:16 -04:00
dkoes
f4dbb3349e
Don't include large notebook in npm
2021-08-13 11:39:19 -04:00
David Koes
f8be74065c
Address Issue #526
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Provide metadata argument to publish_display_data since aparently this
is required in some contexts (even if it is blank).
Also, set __version__ now.
2021-07-20 14:36:20 -04:00
dkoes
5d032de9fd
Initialize screenOffset to avoid warning message.
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Issue #518 and Pull #522
2021-06-01 22:06:11 -04:00
dkoes
53d4556c5d
Fix jshint suppression.
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Had the wrong syntax and thought a quick build would flag problems.
2020-12-21 17:41:35 -05:00
dkoes
fb4f839b9c
Support string callbacks.
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This is for py3Dmol. A Javascript function can be provided as string to
a click or hover callback. This involves the use of the evil eval, but
I see no alternative.
2020-12-21 17:31:01 -05:00
dkoes
a3be0931aa
Fix bug with initial styling
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Was happening after everything else instead of before.
2020-11-23 16:25:26 -05:00
