Updated Docs and Added Bullet Point Config

Signed-off-by: Adithya Krishna <adikrish@redhat.com>

doc.md

@@ -19,13 +19,13 @@ With 3Dmol.js, you can add beautifully rendered molecular visualizations to your
 
 Features include:
 
-1. Support for pdb, sdf, mol2, xyz, and cube formats
-2. Parallelized molecular surface computation
-3. Sphere, stick, line, cross, cartoon, and surface styles
-4. Atom property based selection and styling
-5. Labels
-6. Clickable interactivity with molecular data
-7. Geometric shapes including spheres and arrows
+- Support for pdb, sdf, mol2, xyz, and cube formats
+- Parallelized molecular surface computation
+- Sphere, stick, line, cross, cartoon, and surface styles
+- Atom property based selection and styling
+- Labels
+- Clickable interactivity with molecular data
+- Geometric shapes including spheres and arrows
 
 ## Getting Started
 

jsdoc.conf.json

@@ -40,6 +40,7 @@
             "displayModuleHeader": true,
             "footer":"3Dmol.js © 2019-2023 | <a href='https://pitt.edu/' target='_blank'>University of Pittsburg</a> | <a href='https://github.com/3dmol/3Dmol.js/blob/master/LICENSE' target='_blank'>License</a>",
             "title": "3Dmol.js",
+            "create_style": "article ul li { list-style: disc}",
             "menu": [
                 {
                     "title": " Documentation",

tutorials/embeddable.md

@@ -14,20 +14,20 @@ The code below is all that is needed to create the displayed viewer.
 <div style="height: 500px; width: 500px; position: relative;" class='viewer_3Dmoljs' data-pdb='2POR' data-backgroundcolor='0xffffff' data-style='stick' data-ui='true'></div>       
 
 The contents of the viewer can be set and manipulated through the use of `data-` tags, as shown above.  Supported tags include:
- 1. **data-pdb** The value describes a PDB ID to be loaded into the viewer.
- 2. **data-cid** The value describes a PubChem compound id to be loaded into the viewer.
- 3. **data-href** The value is a URL to a molecular data file.
- 4. **data-element** The value is the id of an HTML element on the current page that has molecular data embedded in it.
- 5. **data-type** The value is the file format (default pdb; can be pdb, sdf, xyz, mol2, or cube).  
- 6. **data-backgroundcolor** The background color (default black).
- 7. **data-backgroundalpha** The background alpha (default opaque: 1.0).
- 8. **data-select** The value is an {@link AtomSpec} selection specification.
- 9. **data-style** The value is a style specification.
- 10. **data-surface** A surface style specification.
- 11. **data-labelres** A residue label style specification.
- 12. **data-zoomto** An {@link AtomSpec} selection specification to zoom to.
- 13. **data-spin** If set will spin the model using {@link $3Dmol.GLViewer#spin}. Can specify axis and speed (e.g. data-spin='axis:z;speed:10')
- 14. **data-ui** If set will show the UI for the viewer.
+ - **data-pdb** The value describes a PDB ID to be loaded into the viewer.
+ - **data-cid** The value describes a PubChem compound id to be loaded into the viewer.
+ - **data-href** The value is a URL to a molecular data file.
+ - **data-element** The value is the id of an HTML element on the current page that has molecular data embedded in it.
+ - **data-type** The value is the file format (default pdb; can be pdb, sdf, xyz, mol2, or cube).  
+ - **data-backgroundcolor** The background color (default black).
+ - **data-backgroundalpha** The background alpha (default opaque: 1.0).
+ - **data-select** The value is an {@link AtomSpec} selection specification.
+ - **data-style** The value is a style specification.
+ - **data-surface** A surface style specification.
+ - **data-labelres** A residue label style specification.
+ - **data-zoomto** An {@link AtomSpec} selection specification to zoom to.
+ - **data-spin** If set will spin the model using {@link $3Dmol.GLViewer#spin}. Can specify axis and speed (e.g. data-spin='axis:z;speed:10')
+ - **data-ui** If set will show the UI for the viewer.
  
  Multiple selections, styles, residue labels, and surfaces can be provided by appending a suffix
  each tag.  

tutorials/home.md

@@ -1,7 +1,7 @@
 
 This guide helps you with learning how to,
 
-1. [Use 3Dmol within your code](tutorial-code.html)
-2. [Embedding a 3Dmol Viewer](tutorial-embeddable.html)
-3. [Active Learning with 3Dmol.js](tutorial-learning_environment.html)
-4. [Hosted 3Dmol.js viewer](tutorial-url.html) 
+- [Use 3Dmol within your code](tutorial-code.html)
+- [Embedding a 3Dmol Viewer](tutorial-embeddable.html)
+- [Active Learning with 3Dmol.js](tutorial-learning_environment.html)
+- [Hosted 3Dmol.js viewer](tutorial-url.html)