Files
Mike Henry 35496e5095 Fix toolkit tests (#227)
* Ensure 0.11.0 RC version of toolkit is installed

* Possible fix to finish #191

* Try to ensure bash args thing is passed through

* Naive unit refactor

* Work through tests

* Update CI matrix

* Use mamba for development

* Debug, add boilerplate .gitignore

* Fix syntax

* make sure the package didn't get installed before we install it

* Do not install Espaloma

* Fix some unit registries in tests

* install espaloma, but remove openmmforcefields

* add back in espaloma

* switch to micromamba

* Explicitly move ffxml sources into entry point

* Remove symlinking

* Add boilerplate `.gitignore`

* Update package installation in CI

* Fix finding Amber files in test

* Soft import whatever units module is used by the toolkit

* Switch to micromamba for setting up conda environment

Add boilerplate `.gitignore` file

Do not pull from non-standard labels

Install instead of update

Try to figure out why if: {{ false }} still triggers

Syntax?

Tinker

Bring in (full) mamba

Bash thing everywhere

Bring down old toolkit

Do not present un-loadable ff14SB port as available

More pins

* Fix YAML syntax

* Use pip

* More fixes

* No particles
* Fix unit serialization
* Fix Atom.element calls

* Update some tests

* Clean up un-used imports

* Fix more tests

* Fix more tests

* Exclude Python 3.10 on macOS

* Skip ff14SB being treated as a small molecule

* Fix test

* Track duration of longest 20 tests

* Update action versions

* Try to fix exclusions in CI matrix

* Fix pathing in Amber conversion

* Run `pyupgrade --py38-plus`

* Try directly uploading coverage report

* Fix syntax

* Add back some tests

* Debug

* Drop `pytest-xdist` arg

* Fiddle with path

* Just try to get stuff passing

* Try uploading again

* Switch back to codecov

* Simply coverage reporting

* Allow 0 coverage

* Simplify coverage arguments

* Add `__init__.py` in `/tests/` submodule

https://stackoverflow.com/a/60579142

* Add `__init__.py` in `/tests/` submodule

https://stackoverflow.com/a/60579142

* Simplify coverage arguments

* Add back durations argument

* Apply suggestions from code review

* only upload report if it is not scheduled

Co-authored-by: Matthew W. Thompson <mattwthompson@protonmail.com>
2022-09-15 20:59:04 +00:00
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2022-09-15 20:59:04 +00:00