openmmforcefields/amber/ffxml/ff99.xml

<ForceField>
  <Info>
    <DateGenerated>2021-01-26</DateGenerated>
    <Source Source="oldff/leaprc.ff99" md5hash="a05fb768205ab9e6f69b8e85cead8af4" sourcePackage="AmberTools" sourcePackageVersion="20.15">oldff/leaprc.ff99</Source>
    <Reference>Wang, J., Cieplak, P., and Kollman, P.A. (2000). How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 21, 1049-1074.</Reference>
  </Info>
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      <Atom name="O" type="O" charge="-0.5679"/>
      <Bond atomName1="N" atomName2="H"/>
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      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
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      <Bond atomName1="CE" atomName2="NZ"/>
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      <Bond atomName1="NZ" atomName2="HZ3"/>
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      <ExternalBond atomName="C"/>
    </Residue>
    <Residue name="LYS">
      <Atom name="N" type="N" charge="-0.3479"/>
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      <Atom name="C" type="C" charge="0.7341"/>
      <Atom name="O" type="O" charge="-0.5894"/>
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      <Bond atomName1="CA" atomName2="C"/>
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      <Bond atomName1="CE" atomName2="NZ"/>
      <Bond atomName1="NZ" atomName2="HZ1"/>
      <Bond atomName1="NZ" atomName2="HZ2"/>
      <Bond atomName1="NZ" atomName2="HZ3"/>
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    </Residue>
    <Residue name="MET">
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    </Residue>
    <Residue name="PHE">
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    </Residue>
    <Residue name="PRO">
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    </Residue>
    <Residue name="SER">
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    </Residue>
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    </Residue>
    <Residue name="TRP">
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      <Bond atomName1="CZ2" atomName2="HZ2"/>
      <Bond atomName1="CZ2" atomName2="CH2"/>
      <Bond atomName1="CH2" atomName2="HH2"/>
      <Bond atomName1="CH2" atomName2="CZ3"/>
      <Bond atomName1="CZ3" atomName2="HZ3"/>
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    </Residue>
    <Residue name="TYR">
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      <Bond atomName1="N" atomName2="H"/>
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    </Residue>
    <Residue name="VAL">
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      <Bond atomName1="CG2" atomName2="HG23"/>
      <Bond atomName1="C" atomName2="O"/>
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      <ExternalBond atomName="C"/>
    </Residue>
    <Residue name="CALA">
      <Atom name="N" type="N" charge="-0.3821"/>
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      <Atom name="HB1" type="HC" charge="0.0764"/>
      <Atom name="HB2" type="HC" charge="0.0764"/>
      <Atom name="HB3" type="HC" charge="0.0764"/>
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      <Atom name="O" type="O2" charge="-0.8055"/>
      <Atom name="OXT" type="O2" charge="-0.8055"/>
      <Bond atomName1="N" atomName2="H"/>
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      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB1"/>
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      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CARG">
      <Atom name="N" type="N" charge="-0.3481"/>
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      <Atom name="HB2" type="HC" charge="0.0371"/>
      <Atom name="HB3" type="HC" charge="0.0371"/>
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      <Atom name="HD22" type="HC" charge="0.1038"/>
      <Atom name="HD23" type="HC" charge="0.1038"/>
      <Atom name="C" type="C" charge="0.8326"/>
      <Atom name="O" type="O2" charge="-0.8199"/>
      <Atom name="OXT" type="O2" charge="-0.8199"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB2"/>
      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="CB" atomName2="CG"/>
      <Bond atomName1="CG" atomName2="HG"/>
      <Bond atomName1="CG" atomName2="CD1"/>
      <Bond atomName1="CG" atomName2="CD2"/>
      <Bond atomName1="CD1" atomName2="HD11"/>
      <Bond atomName1="CD1" atomName2="HD12"/>
      <Bond atomName1="CD1" atomName2="HD13"/>
      <Bond atomName1="CD2" atomName2="HD21"/>
      <Bond atomName1="CD2" atomName2="HD22"/>
      <Bond atomName1="CD2" atomName2="HD23"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CLYS">
      <Atom name="N" type="N" charge="-0.3481"/>
      <Atom name="H" type="H" charge="0.2764"/>
      <Atom name="CA" type="CT" charge="-0.2903"/>
      <Atom name="HA" type="H1" charge="0.1438"/>
      <Atom name="CB" type="CT" charge="-0.0538"/>
      <Atom name="HB2" type="HC" charge="0.0482"/>
      <Atom name="HB3" type="HC" charge="0.0482"/>
      <Atom name="CG" type="CT" charge="0.0227"/>
      <Atom name="HG2" type="HC" charge="0.0134"/>
      <Atom name="HG3" type="HC" charge="0.0134"/>
      <Atom name="CD" type="CT" charge="-0.0392"/>
      <Atom name="HD2" type="HC" charge="0.0611"/>
      <Atom name="HD3" type="HC" charge="0.0611"/>
      <Atom name="CE" type="CT" charge="-0.0176"/>
      <Atom name="HE2" type="HP" charge="0.1121"/>
      <Atom name="HE3" type="HP" charge="0.1121"/>
      <Atom name="NZ" type="N3" charge="-0.3741"/>
      <Atom name="HZ1" type="H" charge="0.3374"/>
      <Atom name="HZ2" type="H" charge="0.3374"/>
      <Atom name="HZ3" type="H" charge="0.3374"/>
      <Atom name="C" type="C" charge="0.8488"/>
      <Atom name="O" type="O2" charge="-0.8252"/>
      <Atom name="OXT" type="O2" charge="-0.8252"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB2"/>
      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="CB" atomName2="CG"/>
      <Bond atomName1="CG" atomName2="HG2"/>
      <Bond atomName1="CG" atomName2="HG3"/>
      <Bond atomName1="CG" atomName2="CD"/>
      <Bond atomName1="CD" atomName2="HD2"/>
      <Bond atomName1="CD" atomName2="HD3"/>
      <Bond atomName1="CD" atomName2="CE"/>
      <Bond atomName1="CE" atomName2="HE2"/>
      <Bond atomName1="CE" atomName2="HE3"/>
      <Bond atomName1="CE" atomName2="NZ"/>
      <Bond atomName1="NZ" atomName2="HZ1"/>
      <Bond atomName1="NZ" atomName2="HZ2"/>
      <Bond atomName1="NZ" atomName2="HZ3"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CMET">
      <Atom name="N" type="N" charge="-0.3821"/>
      <Atom name="H" type="H" charge="0.2681"/>
      <Atom name="CA" type="CT" charge="-0.2597"/>
      <Atom name="HA" type="H1" charge="0.1277"/>
      <Atom name="CB" type="CT" charge="-0.0236"/>
      <Atom name="HB2" type="HC" charge="0.048"/>
      <Atom name="HB3" type="HC" charge="0.048"/>
      <Atom name="CG" type="CT" charge="0.0492"/>
      <Atom name="HG2" type="H1" charge="0.0317"/>
      <Atom name="HG3" type="H1" charge="0.0317"/>
      <Atom name="SD" type="S" charge="-0.2692"/>
      <Atom name="CE" type="CT" charge="-0.0376"/>
      <Atom name="HE1" type="H1" charge="0.0625"/>
      <Atom name="HE2" type="H1" charge="0.0625"/>
      <Atom name="HE3" type="H1" charge="0.0625"/>
      <Atom name="C" type="C" charge="0.8013"/>
      <Atom name="O" type="O2" charge="-0.8105"/>
      <Atom name="OXT" type="O2" charge="-0.8105"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB2"/>
      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="CB" atomName2="CG"/>
      <Bond atomName1="CG" atomName2="HG2"/>
      <Bond atomName1="CG" atomName2="HG3"/>
      <Bond atomName1="CG" atomName2="SD"/>
      <Bond atomName1="SD" atomName2="CE"/>
      <Bond atomName1="CE" atomName2="HE1"/>
      <Bond atomName1="CE" atomName2="HE2"/>
      <Bond atomName1="CE" atomName2="HE3"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CPHE">
      <Atom name="N" type="N" charge="-0.3821"/>
      <Atom name="H" type="H" charge="0.2681"/>
      <Atom name="CA" type="CT" charge="-0.1825"/>
      <Atom name="HA" type="H1" charge="0.1098"/>
      <Atom name="CB" type="CT" charge="-0.0959"/>
      <Atom name="HB2" type="HC" charge="0.0443"/>
      <Atom name="HB3" type="HC" charge="0.0443"/>
      <Atom name="CG" type="CA" charge="0.0552"/>
      <Atom name="CD1" type="CA" charge="-0.13"/>
      <Atom name="HD1" type="HA" charge="0.1408"/>
      <Atom name="CE1" type="CA" charge="-0.1847"/>
      <Atom name="HE1" type="HA" charge="0.1461"/>
      <Atom name="CZ" type="CA" charge="-0.0944"/>
      <Atom name="HZ" type="HA" charge="0.128"/>
      <Atom name="CE2" type="CA" charge="-0.1847"/>
      <Atom name="HE2" type="HA" charge="0.1461"/>
      <Atom name="CD2" type="CA" charge="-0.13"/>
      <Atom name="HD2" type="HA" charge="0.1408"/>
      <Atom name="C" type="C" charge="0.766"/>
      <Atom name="O" type="O2" charge="-0.8026"/>
      <Atom name="OXT" type="O2" charge="-0.8026"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB2"/>
      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="CB" atomName2="CG"/>
      <Bond atomName1="CG" atomName2="CD1"/>
      <Bond atomName1="CG" atomName2="CD2"/>
      <Bond atomName1="CD1" atomName2="HD1"/>
      <Bond atomName1="CD1" atomName2="CE1"/>
      <Bond atomName1="CE1" atomName2="HE1"/>
      <Bond atomName1="CE1" atomName2="CZ"/>
      <Bond atomName1="CZ" atomName2="HZ"/>
      <Bond atomName1="CZ" atomName2="CE2"/>
      <Bond atomName1="CE2" atomName2="HE2"/>
      <Bond atomName1="CE2" atomName2="CD2"/>
      <Bond atomName1="CD2" atomName2="HD2"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CPRO">
      <Atom name="N" type="N" charge="-0.2802"/>
      <Atom name="CD" type="CT" charge="0.0434"/>
      <Atom name="HD2" type="H1" charge="0.0331"/>
      <Atom name="HD3" type="H1" charge="0.0331"/>
      <Atom name="CG" type="CT" charge="0.0466"/>
      <Atom name="HG2" type="HC" charge="0.0172"/>
      <Atom name="HG3" type="HC" charge="0.0172"/>
      <Atom name="CB" type="CT" charge="-0.0543"/>
      <Atom name="HB2" type="HC" charge="0.0381"/>
      <Atom name="HB3" type="HC" charge="0.0381"/>
      <Atom name="CA" type="CT" charge="-0.1336"/>
      <Atom name="HA" type="H1" charge="0.0776"/>
      <Atom name="C" type="C" charge="0.6631"/>
      <Atom name="O" type="O2" charge="-0.7697"/>
      <Atom name="OXT" type="O2" charge="-0.7697"/>
      <Bond atomName1="N" atomName2="CD"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CD" atomName2="HD2"/>
      <Bond atomName1="CD" atomName2="HD3"/>
      <Bond atomName1="CD" atomName2="CG"/>
      <Bond atomName1="CG" atomName2="HG2"/>
      <Bond atomName1="CG" atomName2="HG3"/>
      <Bond atomName1="CG" atomName2="CB"/>
      <Bond atomName1="CB" atomName2="HB2"/>
      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="CB" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CSER">
      <Atom name="N" type="N" charge="-0.3821"/>
      <Atom name="H" type="H" charge="0.2681"/>
      <Atom name="CA" type="CT" charge="-0.2722"/>
      <Atom name="HA" type="H1" charge="0.1304"/>
      <Atom name="CB" type="CT" charge="0.1123"/>
      <Atom name="HB2" type="H1" charge="0.0813"/>
      <Atom name="HB3" type="H1" charge="0.0813"/>
      <Atom name="OG" type="OH" charge="-0.6514"/>
      <Atom name="HG" type="HO" charge="0.4474"/>
      <Atom name="C" type="C" charge="0.8113"/>
      <Atom name="O" type="O2" charge="-0.8132"/>
      <Atom name="OXT" type="O2" charge="-0.8132"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB2"/>
      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="CB" atomName2="OG"/>
      <Bond atomName1="OG" atomName2="HG"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CTHR">
      <Atom name="N" type="N" charge="-0.3821"/>
      <Atom name="H" type="H" charge="0.2681"/>
      <Atom name="CA" type="CT" charge="-0.242"/>
      <Atom name="HA" type="H1" charge="0.1207"/>
      <Atom name="CB" type="CT" charge="0.3025"/>
      <Atom name="HB" type="H1" charge="0.0078"/>
      <Atom name="CG2" type="CT" charge="-0.1853"/>
      <Atom name="HG21" type="HC" charge="0.0586"/>
      <Atom name="HG22" type="HC" charge="0.0586"/>
      <Atom name="HG23" type="HC" charge="0.0586"/>
      <Atom name="OG1" type="OH" charge="-0.6496"/>
      <Atom name="HG1" type="HO" charge="0.4119"/>
      <Atom name="C" type="C" charge="0.781"/>
      <Atom name="O" type="O2" charge="-0.8044"/>
      <Atom name="OXT" type="O2" charge="-0.8044"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB"/>
      <Bond atomName1="CB" atomName2="CG2"/>
      <Bond atomName1="CB" atomName2="OG1"/>
      <Bond atomName1="CG2" atomName2="HG21"/>
      <Bond atomName1="CG2" atomName2="HG22"/>
      <Bond atomName1="CG2" atomName2="HG23"/>
      <Bond atomName1="OG1" atomName2="HG1"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CTRP">
      <Atom name="N" type="N" charge="-0.3821"/>
      <Atom name="H" type="H" charge="0.2681"/>
      <Atom name="CA" type="CT" charge="-0.2084"/>
      <Atom name="HA" type="H1" charge="0.1272"/>
      <Atom name="CB" type="CT" charge="-0.0742"/>
      <Atom name="HB2" type="HC" charge="0.0497"/>
      <Atom name="HB3" type="HC" charge="0.0497"/>
      <Atom name="CG" type="C*" charge="-0.0796"/>
      <Atom name="CD1" type="CW" charge="-0.1808"/>
      <Atom name="HD1" type="H4" charge="0.2043"/>
      <Atom name="NE1" type="NA" charge="-0.3316"/>
      <Atom name="HE1" type="H" charge="0.3413"/>
      <Atom name="CE2" type="CN" charge="0.1222"/>
      <Atom name="CZ2" type="CA" charge="-0.2594"/>
      <Atom name="HZ2" type="HA" charge="0.1567"/>
      <Atom name="CH2" type="CA" charge="-0.102"/>
      <Atom name="HH2" type="HA" charge="0.1401"/>
      <Atom name="CZ3" type="CA" charge="-0.2287"/>
      <Atom name="HZ3" type="HA" charge="0.1507"/>
      <Atom name="CE3" type="CA" charge="-0.1837"/>
      <Atom name="HE3" type="HA" charge="0.1491"/>
      <Atom name="CD2" type="CB" charge="0.1078"/>
      <Atom name="C" type="C" charge="0.7658"/>
      <Atom name="O" type="O2" charge="-0.8011"/>
      <Atom name="OXT" type="O2" charge="-0.8011"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB2"/>
      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="CB" atomName2="CG"/>
      <Bond atomName1="CG" atomName2="CD1"/>
      <Bond atomName1="CG" atomName2="CD2"/>
      <Bond atomName1="CD1" atomName2="HD1"/>
      <Bond atomName1="CD1" atomName2="NE1"/>
      <Bond atomName1="NE1" atomName2="HE1"/>
      <Bond atomName1="NE1" atomName2="CE2"/>
      <Bond atomName1="CE2" atomName2="CZ2"/>
      <Bond atomName1="CE2" atomName2="CD2"/>
      <Bond atomName1="CZ2" atomName2="HZ2"/>
      <Bond atomName1="CZ2" atomName2="CH2"/>
      <Bond atomName1="CH2" atomName2="HH2"/>
      <Bond atomName1="CH2" atomName2="CZ3"/>
      <Bond atomName1="CZ3" atomName2="HZ3"/>
      <Bond atomName1="CZ3" atomName2="CE3"/>
      <Bond atomName1="CE3" atomName2="HE3"/>
      <Bond atomName1="CE3" atomName2="CD2"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CTYR">
      <Atom name="N" type="N" charge="-0.3821"/>
      <Atom name="H" type="H" charge="0.2681"/>
      <Atom name="CA" type="CT" charge="-0.2015"/>
      <Atom name="HA" type="H1" charge="0.1092"/>
      <Atom name="CB" type="CT" charge="-0.0752"/>
      <Atom name="HB2" type="HC" charge="0.049"/>
      <Atom name="HB3" type="HC" charge="0.049"/>
      <Atom name="CG" type="CA" charge="0.0243"/>
      <Atom name="CD1" type="CA" charge="-0.1922"/>
      <Atom name="HD1" type="HA" charge="0.178"/>
      <Atom name="CE1" type="CA" charge="-0.2458"/>
      <Atom name="HE1" type="HA" charge="0.1673"/>
      <Atom name="CZ" type="C" charge="0.3395"/>
      <Atom name="OH" type="OH" charge="-0.5643"/>
      <Atom name="HH" type="HO" charge="0.4017"/>
      <Atom name="CE2" type="CA" charge="-0.2458"/>
      <Atom name="HE2" type="HA" charge="0.1673"/>
      <Atom name="CD2" type="CA" charge="-0.1922"/>
      <Atom name="HD2" type="HA" charge="0.178"/>
      <Atom name="C" type="C" charge="0.7817"/>
      <Atom name="O" type="O2" charge="-0.807"/>
      <Atom name="OXT" type="O2" charge="-0.807"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB2"/>
      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="CB" atomName2="CG"/>
      <Bond atomName1="CG" atomName2="CD1"/>
      <Bond atomName1="CG" atomName2="CD2"/>
      <Bond atomName1="CD1" atomName2="HD1"/>
      <Bond atomName1="CD1" atomName2="CE1"/>
      <Bond atomName1="CE1" atomName2="HE1"/>
      <Bond atomName1="CE1" atomName2="CZ"/>
      <Bond atomName1="CZ" atomName2="OH"/>
      <Bond atomName1="CZ" atomName2="CE2"/>
      <Bond atomName1="OH" atomName2="HH"/>
      <Bond atomName1="CE2" atomName2="HE2"/>
      <Bond atomName1="CE2" atomName2="CD2"/>
      <Bond atomName1="CD2" atomName2="HD2"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="CVAL">
      <Atom name="N" type="N" charge="-0.3821"/>
      <Atom name="H" type="H" charge="0.2681"/>
      <Atom name="CA" type="CT" charge="-0.3438"/>
      <Atom name="HA" type="H1" charge="0.1438"/>
      <Atom name="CB" type="CT" charge="0.194"/>
      <Atom name="HB" type="HC" charge="0.0308"/>
      <Atom name="CG1" type="CT" charge="-0.3064"/>
      <Atom name="HG11" type="HC" charge="0.0836"/>
      <Atom name="HG12" type="HC" charge="0.0836"/>
      <Atom name="HG13" type="HC" charge="0.0836"/>
      <Atom name="CG2" type="CT" charge="-0.3064"/>
      <Atom name="HG21" type="HC" charge="0.0836"/>
      <Atom name="HG22" type="HC" charge="0.0836"/>
      <Atom name="HG23" type="HC" charge="0.0836"/>
      <Atom name="C" type="C" charge="0.835"/>
      <Atom name="O" type="O2" charge="-0.8173"/>
      <Atom name="OXT" type="O2" charge="-0.8173"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB"/>
      <Bond atomName1="CB" atomName2="CG1"/>
      <Bond atomName1="CB" atomName2="CG2"/>
      <Bond atomName1="CG1" atomName2="HG11"/>
      <Bond atomName1="CG1" atomName2="HG12"/>
      <Bond atomName1="CG1" atomName2="HG13"/>
      <Bond atomName1="CG2" atomName2="HG21"/>
      <Bond atomName1="CG2" atomName2="HG22"/>
      <Bond atomName1="CG2" atomName2="HG23"/>
      <Bond atomName1="C" atomName2="O"/>
      <Bond atomName1="C" atomName2="OXT"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="NHE">
      <Atom name="N" type="N" charge="-0.463"/>
      <Atom name="HN1" type="H" charge="0.2315"/>
      <Atom name="HN2" type="H" charge="0.2315"/>
      <Bond atomName1="N" atomName2="HN1"/>
      <Bond atomName1="N" atomName2="HN2"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="NME">
      <Atom name="N" type="N" charge="-0.4157"/>
      <Atom name="H" type="H" charge="0.2719"/>
      <Atom name="CH3" type="CT" charge="-0.149"/>
      <Atom name="HH31" type="H1" charge="0.0976"/>
      <Atom name="HH32" type="H1" charge="0.0976"/>
      <Atom name="HH33" type="H1" charge="0.0976"/>
      <Bond atomName1="N" atomName2="H"/>
      <Bond atomName1="N" atomName2="CH3"/>
      <Bond atomName1="CH3" atomName2="HH31"/>
      <Bond atomName1="CH3" atomName2="HH32"/>
      <Bond atomName1="CH3" atomName2="HH33"/>
      <ExternalBond atomName="N"/>
    </Residue>
    <Residue name="ACE">
      <Atom name="HH31" type="HC" charge="0.1123"/>
      <Atom name="CH3" type="CT" charge="-0.3662"/>
      <Atom name="HH32" type="HC" charge="0.1123"/>
      <Atom name="HH33" type="HC" charge="0.1123"/>
      <Atom name="C" type="C" charge="0.5972"/>
      <Atom name="O" type="O" charge="-0.5679"/>
      <Bond atomName1="HH31" atomName2="CH3"/>
      <Bond atomName1="CH3" atomName2="HH32"/>
      <Bond atomName1="CH3" atomName2="HH33"/>
      <Bond atomName1="CH3" atomName2="C"/>
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    <Residue name="NILE">
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    <Residue name="NLEU">
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    <Residue name="NLYS">
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    </Residue>
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    </Residue>
    <Residue name="NPRO">
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    </Residue>
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    </Residue>
    <Residue name="NTHR">
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      <ExternalBond atomName="C"/>
    </Residue>
    <Residue name="NTRP">
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      <Atom name="CZ2" type="CA" charge="-0.271"/>
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      <Atom name="CH2" type="CA" charge="-0.108"/>
      <Atom name="HH2" type="HA" charge="0.1411"/>
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      <Atom name="HZ3" type="HA" charge="0.1458"/>
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      <Atom name="HE3" type="HA" charge="0.1646"/>
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      <Atom name="C" type="C" charge="0.6123"/>
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      <Bond atomName1="CD1" atomName2="NE1"/>
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      <Bond atomName1="CZ2" atomName2="HZ2"/>
      <Bond atomName1="CZ2" atomName2="CH2"/>
      <Bond atomName1="CH2" atomName2="HH2"/>
      <Bond atomName1="CH2" atomName2="CZ3"/>
      <Bond atomName1="CZ3" atomName2="HZ3"/>
      <Bond atomName1="CZ3" atomName2="CE3"/>
      <Bond atomName1="CE3" atomName2="HE3"/>
      <Bond atomName1="CE3" atomName2="CD2"/>
      <Bond atomName1="C" atomName2="O"/>
      <ExternalBond atomName="C"/>
    </Residue>
    <Residue name="NTYR">
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      <Atom name="H2" type="H" charge="0.1873"/>
      <Atom name="H3" type="H" charge="0.1873"/>
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      <Atom name="HB2" type="HC" charge="0.0102"/>
      <Atom name="HB3" type="HC" charge="0.0102"/>
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      <Atom name="HD1" type="HA" charge="0.172"/>
      <Atom name="CE1" type="CA" charge="-0.2239"/>
      <Atom name="HE1" type="HA" charge="0.165"/>
      <Atom name="CZ" type="C" charge="0.3139"/>
      <Atom name="OH" type="OH" charge="-0.5578"/>
      <Atom name="HH" type="HO" charge="0.4001"/>
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      <Atom name="HE2" type="HA" charge="0.165"/>
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      <Atom name="HD2" type="HA" charge="0.172"/>
      <Atom name="C" type="C" charge="0.6123"/>
      <Atom name="O" type="O" charge="-0.5713"/>
      <Bond atomName1="N" atomName2="H1"/>
      <Bond atomName1="N" atomName2="H2"/>
      <Bond atomName1="N" atomName2="H3"/>
      <Bond atomName1="N" atomName2="CA"/>
      <Bond atomName1="CA" atomName2="HA"/>
      <Bond atomName1="CA" atomName2="CB"/>
      <Bond atomName1="CA" atomName2="C"/>
      <Bond atomName1="CB" atomName2="HB2"/>
      <Bond atomName1="CB" atomName2="HB3"/>
      <Bond atomName1="CB" atomName2="CG"/>
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    <Atom type="SH" sigma="0.35635948725613575" epsilon="1.046"/>
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</ForceField>