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eaf56f96bc
* Correct AmoebaAngleTorsion in test_Amoeba18Nucleic of TestForceField * Update processTinkerForceField to handle latest .prm Tinker files * Update amoeba2018 XML files * Update amoeba2013 XML files * Update amoeba2009 XML files * Adapt addTorTor to new format in the .prm files * Fix TorsionTorsion * Also update the total energy in test_Amoeba18Nucleic * Update amoebabio18.prm * Fix nucleic acid test energies * Correct AmoebaAngleTorsionForce params * Add new addTorTor to TinkerFiles * Revert unit fix * Change to .pdb file which Tinker likes * Update test_Amoeba18BPTI * Remove trailing zeros from XML files * Leave trailing zeros only on 2018 ff * New element names in 2018 * More digits for surfaceAreaFactor * More digits for surfaceAreaFactor * More digits * Remove debugging print * Add support to 2009 and 2013 AMOEBA ffs to processTinkerForceField.py * Add FF specific residues XML files * Delete old residuesFinal.xml * Update AMOEBA XML ffs * Update FFs * Fix some formatting issues * Fix "." in scientific notation * Remove old assertions