mirror of
https://github.com/openmm/openmm
synced 2026-06-03 06:39:48 +09:00
e53bdc5eab
* Top level Python module is now "openmm" * Updated module names in examples * Updated module names in documentation * Updated module in CI scripts * Added deprecation warning
70 lines
1.1 KiB
Django/Jinja
70 lines
1.1 KiB
Django/Jinja
.. _app :
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Application Layer
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=================
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Loaders and Setup
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~~~~~~~~~~~~~~~~~
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.. autosummary::
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:toctree: generated/
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:template: class.rst
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{% for fileclass in fileclasses %}
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~{{ fileclass }}
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{% endfor %}
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Representation and Manipulation
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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.. autosummary::
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:toctree: generated/
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:template: class.rst
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~openmm.app.topology.Topology
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~openmm.app.topology.Chain
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~openmm.app.topology.Residue
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~openmm.app.topology.Atom
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~openmm.app.modeller.Modeller
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Simulation
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~~~~~~~~~~
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.. autosummary::
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:toctree: generated/
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:template: class.rst
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~openmm.app.forcefield.ForceField
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~openmm.app.simulation.Simulation
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Reporting Output
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~~~~~~~~~~~~~~~~
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.. autosummary::
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:toctree: generated/
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:template: class.rst
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{% for reporter in reporters %}
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~{{ reporter }}
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{% endfor %}
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Extras
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~~~~~~
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.. autosummary::
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:toctree: generated/
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:template: class.rst
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{% for extra in app_extras %}
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~{{ extra }}
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{% endfor %}
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Units
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~~~~~~
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.. autosummary::
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:toctree: generated/
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:template: class.rst
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:nosignatures:
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{% for unit in units %}
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~{{ unit }}
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{% endfor %}
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