mirror of
https://github.com/openmm/openmm
synced 2026-06-03 06:39:48 +09:00
bb3073d4f3
* Reference implementation of SymmetrySite * Common implementation of SymmetrySite * Removed duplicated code * Serialization for SymmetrySite * Fixed compilation error building C wrapper * Added SymmetrySite to user guide * Bug fix * Added P21 test case
70 lines
1.6 KiB
ReStructuredText
70 lines
1.6 KiB
ReStructuredText
=============
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Extra classes
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=============
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Tabulated functions
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===================
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These classes use table of values to define a mathematical function and can be
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used by various :ref:`custom forces <custom-forces>`.
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The :ref:`OpenMM::TabulatedFunction` class is an abstract class that the other classes
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extend.
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.. toctree::
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:maxdepth: 2
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generated/TabulatedFunction
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generated/Continuous1DFunction
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generated/Continuous2DFunction
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generated/Continuous3DFunction
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generated/Discrete1DFunction
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generated/Discrete2DFunction
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generated/Discrete3DFunction
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Virtual Sites
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=============
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A virtual site is a particle whose position is computed directly from the
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positions of other particles. The :ref:`OpenMM::VirtualSite` class is an abstract
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class that the other classes extend.
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.. toctree::
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:maxdepth: 2
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generated/VirtualSite
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generated/LocalCoordinatesSite
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generated/OutOfPlaneSite
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generated/ThreeParticleAverageSite
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generated/TwoParticleAverageSite
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generated/SymmetrySite
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Serialization
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=============
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These classes are used to serialize other objects, allowing them to be stored on
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disk.
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.. toctree::
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:maxdepth: 2
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generated/SerializationNode
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generated/SerializationProxy
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generated/XmlSerializer
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Other classes
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=============
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These classes don't fit neatly into the other categories, but that is not to say
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that they aren't important!
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.. toctree::
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:maxdepth: 2
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generated/LocalEnergyMinimizer
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generated/MinimizationReporter
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generated/NoseHooverChain
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generated/OpenMMException
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generated/Vec3
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