/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit. * * See https://openmm.org/development. * * * * Portions copyright (c) 2010-2025 Stanford University and the Authors. * * Authors: Peter Eastman, Evan Pretti * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/internal/AssertionUtilities.h" #include "openmm/ConstantPotentialForce.h" #include "openmm/serialization/XmlSerializer.h" #include #include using namespace OpenMM; using namespace std; void testSerialization() { // Create a Force. ConstantPotentialForce force; force.setForceGroup(3); force.setName("custom name"); force.setCutoffDistance(2.0); force.setEwaldErrorTolerance(1e-3); force.setExceptionsUsePeriodicBoundaryConditions(true); double alpha = 0.5; int nx = 3, ny = 5, nz = 7; force.setPMEParameters(alpha, nx, ny, nz); force.setConstantPotentialMethod(ConstantPotentialForce::Matrix); force.setUsePreconditioner(false); force.setCGErrorTolerance(2e-8); force.setUseChargeConstraint(true); force.setChargeConstraintTarget(0.1); Vec3 externalField(1.0, 2.0, 3.0); force.setExternalField(externalField); force.addParticle(1); force.addParticle(0.0); force.addParticle(0.0); force.addParticle(0.0); force.addParticle(0.0); force.addParticle(0.0); force.addParticle(0.5); force.addParticle(-0.5); force.addException(0, 6, 2); force.addException(6, 7, 0.2); std::set electrode1Particles{1, 2, 4}; std::set electrode2Particles{3, 5}; force.addElectrode(electrode1Particles, 1.0, 0.5, 2.0); force.addElectrode(electrode2Particles, -0.5, 0.75, 1.5); // Serialize and then deserialize it. stringstream buffer; XmlSerializer::serialize(&force, "Force", buffer); ConstantPotentialForce* copy = XmlSerializer::deserialize(buffer); // Compare the two forces to see if they are identical. ConstantPotentialForce& force2 = *copy; ASSERT_EQUAL(force.getForceGroup(), force2.getForceGroup()); ASSERT_EQUAL(force.getName(), force2.getName()); ASSERT_EQUAL(force.getCutoffDistance(), force2.getCutoffDistance()); ASSERT_EQUAL(force.getEwaldErrorTolerance(), force2.getEwaldErrorTolerance()); ASSERT_EQUAL(force.getExceptionsUsePeriodicBoundaryConditions(), force2.getExceptionsUsePeriodicBoundaryConditions()); double alpha2; int nx2, ny2, nz2; force2.getPMEParameters(alpha2, nx2, ny2, nz2); ASSERT_EQUAL(alpha, alpha2); ASSERT_EQUAL(nx, nx2); ASSERT_EQUAL(ny, ny2); ASSERT_EQUAL(nz, nz2); ASSERT_EQUAL(force.getConstantPotentialMethod(), force2.getConstantPotentialMethod()); ASSERT_EQUAL(force.getUsePreconditioner(), force2.getUsePreconditioner()); ASSERT_EQUAL(force.getCGErrorTolerance(), force2.getCGErrorTolerance()); ASSERT_EQUAL(force.getUseChargeConstraint(), force2.getUseChargeConstraint()); ASSERT_EQUAL(force.getChargeConstraintTarget(), force2.getChargeConstraintTarget()); Vec3 externalField2; force2.getExternalField(externalField2); ASSERT_EQUAL(externalField, externalField2); ASSERT_EQUAL(force.getNumParticles(), force2.getNumParticles()); for (int i = 0; i < force.getNumParticles(); i++) { double charge1, charge2; force.getParticleParameters(i, charge1); force2.getParticleParameters(i, charge2); ASSERT_EQUAL(charge1, charge2); } ASSERT_EQUAL(force.getNumExceptions(), force2.getNumExceptions()); for (int i = 0; i < force.getNumExceptions(); i++) { int a1, a2, b1, b2; double charge1, charge2; force.getExceptionParameters(i, a1, b1, charge1); force2.getExceptionParameters(i, a2, b2, charge2); ASSERT_EQUAL(a1, a2); ASSERT_EQUAL(b1, b2); ASSERT_EQUAL(charge1, charge2); } ASSERT_EQUAL(force.getNumElectrodes(), force2.getNumElectrodes()); for (int i = 0; i < force.getNumElectrodes(); i++) { std::set electrodeParticles1, electrodeParticles2; double potential1, potential2; double gaussianWidth1, gaussianWidth2; double thomasFermiScale1, thomasFermiScale2; force.getElectrodeParameters(i, electrodeParticles1, potential1, gaussianWidth1, thomasFermiScale1); force2.getElectrodeParameters(i, electrodeParticles2, potential2, gaussianWidth2, thomasFermiScale2); ASSERT_EQUAL_CONTAINERS(electrodeParticles1, electrodeParticles2); ASSERT_EQUAL(potential1, potential2); ASSERT_EQUAL(gaussianWidth1, gaussianWidth2); ASSERT_EQUAL(thomasFermiScale1, thomasFermiScale2); } } int main() { try { testSerialization(); } catch(const exception& e) { cout << "exception: " << e.what() << endl; return 1; } cout << "Done" << endl; return 0; }