/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit. * * See https://openmm.org/development. * * * * Portions copyright (c) 2015-2025 Stanford University and the Authors. * * Authors: Peter Eastman, Evan Prettt * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "ReferenceTests.h" #include "TestEwald.h" #include "ReferencePME.h" void testReferencePmeDerivatives() { // Ensures that derivatives reported by the reference PME implementation // match those estimated by finite differences. Checks both forces and // charge derivatives for a system with a non-zero net charge. static const double DELTA = 1e-5; static const double EPSILON = 1e-5; Vec3 boxVectors[3] = { Vec3(10, 0, 0), Vec3(1, 9, 0), Vec3(2, 3, 8) }; int numParticles = 10; vector positions; vector charges; vector indices; for (int i = 0; i < numParticles; i++) { double f = (double)i / numParticles; positions.push_back(f * boxVectors[0] + f * f * boxVectors[1] + f * f * f * boxVectors[2]); charges.push_back((i % 2 ? -1 : 1) + f * f); indices.push_back(i); } double ewaldAlpha = 1.752; int gridSize[3] = {54, 49, 43}; ReferencePME pme(ewaldAlpha, numParticles, gridSize, 5, 1); double dummyEnergy=0; vector dummyForces(numParticles); vector testForces(numParticles); pme.exec(positions, testForces, charges, boxVectors, dummyEnergy); for (int i = 0; i < numParticles; i++) { for (int j = 0; j < 3; j++) { double referencePosition = positions[i][j]; double energyLess = 0.0; positions[i][j] = referencePosition - DELTA; pme.exec(positions, dummyForces, charges, boxVectors, energyLess); double energyMore = 0.0; positions[i][j] = referencePosition + DELTA; pme.exec(positions, dummyForces, charges, boxVectors, energyMore); positions[i][j] = referencePosition; ASSERT_EQUAL_TOL((energyMore - energyLess) / (2 * DELTA), -testForces[i][j], EPSILON); } } vector testDerivatives(numParticles); pme.exec_charge_derivatives(positions, testDerivatives, indices, charges, boxVectors); for (int i = 0; i < numParticles; i++) { double referenceCharge = charges[i]; double energyLess = 0.0; charges[i] = referenceCharge - DELTA; pme.exec(positions, dummyForces, charges, boxVectors, energyLess); double energyMore = 0.0; charges[i] = referenceCharge + DELTA; pme.exec(positions, dummyForces, charges, boxVectors, energyMore); charges[i] = referenceCharge; ASSERT_EQUAL_TOL((energyMore - energyLess) / (2 * DELTA), testDerivatives[i], EPSILON); } } void runPlatformTests() { testReferencePmeDerivatives(); }